Index _ | A | B | C | F | G | H | I | L | M | N | O | P | Q | T _ __init__() (cytopus.tl.hierarchy.Hierarchy method) A add_cells() (cytopus.tl.hierarchy.Hierarchy method) B build_nested_dict() (in module cytopus.tl.hierarchy) C construct_kb() (in module cytopus.tl.create) create_hierarchical_graph() (in module cytopus.tl.hierarchy) cytopus.tl.create module cytopus.tl.hierarchy module cytopus.tl.label module F flatten_hierarchical_dict() (in module cytopus.tl.label) G geneset_to_csv() (in module cytopus.tl.label) get_all_keys() (in module cytopus.tl.hierarchy) get_cells_for_cell_type() (cytopus.tl.hierarchy.Hierarchy method) get_celltype() (in module cytopus.tl.label) get_gmt() (in module cytopus.tl.label) get_hierarchy_dict() (in module cytopus.tl.hierarchy) get_indices() (in module cytopus.tl.hierarchy) get_node_labels() (in module cytopus.tl.hierarchy) get_nodes_of_type() (in module cytopus.tl.hierarchy) H Hierarchy (class in cytopus.tl.hierarchy) hierarchy_to_csv() (in module cytopus.tl.label) I identities() (cytopus.tl.hierarchy.Hierarchy method) L label_marker_genes() (in module cytopus.tl.label) M metadata_to_csv() (in module cytopus.tl.label) module cytopus.tl.create cytopus.tl.hierarchy cytopus.tl.label N nx (cytopus.tl.hierarchy.Hierarchy attribute) O overlap_coefficient() (in module cytopus.tl.label) P plot_celltypes() (cytopus.tl.hierarchy.Hierarchy method) Q query_ancestors() (cytopus.tl.hierarchy.Hierarchy method) T trim_annotations() (cytopus.tl.hierarchy.Hierarchy method)